PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo3G0050600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 332aa    MW: 36106.6 Da    PI: 4.6284
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo3G0050600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.72.8e-05179246955
                     HHHHHHHHHHHHHHHHCTSCCC.......................TTS-.STCHHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkas....................kapskK.lsKaeiLekAveYIksLq 55 
                      rrRR++i +++  L e  P++                     k++s    +  ++L  A++YIk+L+
  Spipo3G0050600 179 SRRRRAKIAEGIKALEESTPQSGkvqleprsvfrisaavafncKESSSFdGTRESVLDDAIDYIKYLK 246
                     59*******************7679******************66666669999************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.566170245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-6180246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-5180253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MEGNSQGTFN HPEPGSSSVA VGIECVCENA LDAAVDELEA QKNSFVAESL LPSLYDQPSC  60
DDVDLLSAIP LPPDGTPQEF IAKYGCWKAD DDPEALGHPL SKRLKRPPVF SEFHCHDQRD  120
MWSLEDYLVS LYPCPVEERL HEESYNAAVQ SEASAAAAVT VAAQGLCSKE STSSNAIDSR  180
RRRAKIAEGI KALEESTPQS GKVQLEPRSV FRISAAVAFN CKESSSFDGT RESVLDDAID  240
YIKYLKLQLL ASHALGQSRL GGEPIHHPFV HLEGFGHYIL HQQMRTEPLE EVMGHLMESN  300
LPAAIRLLES KGLELLPISS ADIILRAGAA L*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2505134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.13e-11LJRHL1-like 2